PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g11330.3.p
Common NameBRADI_5g11330, LOC100833148
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 687aa    MW: 77678.1 Da    PI: 7.2273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g11330.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55.2e-1968163191
              FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                       +fY+ +Ak++GFs+r+++++ +    + it+r fvC + g++  +  +   k +r+r+++r+gC+a l++ ++      +w+vt ++++HnHe
  Bradi5g11330.3.p  68 EFYSGFAKQCGFSIRRHRTEGKdGVGKGITRRYFVCHRAGNTPAKPFSdGAKPQRNRKSSRCGCQAYLRIGRDAgagAPEWRVTGFSNHHNHE 160
                       6**************99988774566779***********998887664677889*****************99877789************* PP

              FAR1  89 lap 91 
                       l p
  Bradi5g11330.3.p 161 LLP 163
                       975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1668163IPR004330FAR1 DNA binding domain
PfamPF105514.4E-16283374IPR018289MULE transposase domain
PROSITE profilePS509669.891560596IPR007527Zinc finger, SWIM-type
PfamPF044345.5E-6568595IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-5571598IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MPAKSAFLLE CGDPLEQRVS SSMEGTSSGE EEDEESPNKT SLSLETAAAD DSAPYIGQRF  60
LTHDEAYEFY SGFAKQCGFS IRRHRTEGKD GVGKGITRRY FVCHRAGNTP AKPFSDGAKP  120
QRNRKSSRCG CQAYLRIGRD AGAGAPEWRV TGFSNHHNHE LLPQDQVRFL PAYRVISDSD  180
RGRILMFAKS GISVQQMMRI MELEKCVEPG SLPFTEKDVS NLILSFRRFD QEESIDLLRM  240
CRILKENDPN FMYDFTKMND RLEHIAWSYA SSIQSYEIFG DAVIFDTNHR LTALDMALGI  300
WIGLNNYGMP CFFGCALLRE ESVHSFAWAL QVFLNFMNRK APQTIMTDQN VYLKEAVEKE  360
LPNTKHALSI WLIAARFPSW FNSVLGKRYN DWKNEFYRLY NMENTIDFDL GWSDMVNCYG  420
LHGDRHIATL FASRKHWALP YLRGYFSAGL TAIPEFSKSI NAFVQQFMSA QTRISHFVEQ  480
VAIVVDDKDQ AVGQQIMQEN LQNISFKTAV PMEGHAAAVL TPFAFSKLHD ELVAAAHYAS  540
FHLEGNAFLV RHCTKTEGGC SVTWNQSEEL VSCSCQLFES SGILCRHALH VLTSLNYLQI  600
PDHYLPVRWR RTQSRPPKSL SGIPDHGGAS KRVKALQSMV SALVREAAKS DERMDIATQE  660
VSVLLSRIRQ QPVLVNISGD SVHRQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581280.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_010239957.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLI1IY680.0I1IY68_BRADI; Uncharacterized protein
STRINGBRADI5G11330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11